2020-11-05 10:15:15 +00:00
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"bwa" sample introduction
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==============
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This sample demonstrates how to build [bwa](https://github.com/lh3/bwa) into
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WebAssembly with simd support and run it with iwasm.
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## Preparation
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please refer to [installation instructions](../README.md).
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## Build
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``` shell
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$ mkdir build && cd build
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$ cmake ..
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$ make
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# to verify
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$ ls bwa.wasm
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```
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## Download sample data
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Download the bwa-0.7.15 binary package from
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[such an address](https://sourceforge.net/projects/bio-bwa/files/bwakit/bwakit-0.7.15_x64-linux.tar.bz2/download),
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a sample data file named **hs38DH.fa** will be used later.
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If want more data, please refer to http://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/
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## Run workload
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Firstly please build iwasm with simd support:
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``` shell
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$ cd <wamr dir>/product-mini/platforms/linux/
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$ mkdir build && cd build
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2023-02-02 01:42:25 +00:00
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$ cmake ..
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2020-11-05 10:15:15 +00:00
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$ make
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```
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Then compile wasm file to aot file and run:
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``` shell
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2020-12-29 06:41:09 +00:00
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$ cd <wamr dir>/samples/workload/bwa/build
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2023-02-02 01:42:25 +00:00
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$ <wamr dir>/wamr-compiler/build/wamrc -o bwa.aot bwa.wasm
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2024-07-12 08:58:10 +00:00
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$ <wamr dir>/product-mini/platforms/linux/iwasm --dir=. bwa.aot index hs38DH-extra.fa
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2020-11-05 10:15:15 +00:00
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```
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