mirror of
https://github.com/bytecodealliance/wasm-micro-runtime.git
synced 2025-02-06 06:55:07 +00:00
c254bffbc5
Error was reported when building jetstream benchmark with emsdk: ``` clang: error: unsupported option '-msse2' for target 'wasm32-wasi' ``` Error was reported when building bwa workload: ``` fatal: reference is not a tree: 139f68fc4c3747813783a488aef2adc86626b01b ```
73 lines
2.9 KiB
CMake
73 lines
2.9 KiB
CMake
# Copyright (C) 2019 Intel Corporation. All rights reserved.
|
|
# SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception
|
|
|
|
cmake_minimum_required (VERSION 3.14)
|
|
|
|
project(bwa_wasm)
|
|
|
|
list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/../cmake)
|
|
|
|
################ dependencies ################
|
|
find_package(Python3 REQUIRED)
|
|
find_package(WASISDK 16.0 REQUIRED)
|
|
execute_process(
|
|
COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_LIST_DIR}/../../../test-tools/pick-up-emscripten-headers/collect_files.py --install ../include --loglevel=ERROR
|
|
WORKING_DIRECTORY ${CMAKE_CURRENT_LIST_DIR}
|
|
)
|
|
|
|
#######################################
|
|
include(ExternalProject)
|
|
|
|
################ libz ################
|
|
ExternalProject_Add(libz_src
|
|
GIT_REPOSITORY https://github.com/madler/zlib.git
|
|
GIT_TAG 04f42ceca40f73e2978b50e93806c2a18c1281fc
|
|
GIT_PROGRESS ON
|
|
GIT_SHALLOW ON
|
|
SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libz
|
|
UPDATE_COMMAND ""
|
|
PATCH_COMMAND ""
|
|
CONFIGURE_COMMAND ""
|
|
BUILD_COMMAND ""
|
|
INSTALL_COMMAND ""
|
|
)
|
|
|
|
################ bwa ################
|
|
ExternalProject_Add(bwa
|
|
GIT_REPOSITORY https://github.com/lh3/bwa.git
|
|
GIT_TAG v0.7.18
|
|
GIT_PROGRESS ON
|
|
SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/bwa
|
|
DEPENDS libz_src
|
|
UPDATE_COMMAND git clean -ffdx && git checkout -- *
|
|
&& ${CMAKE_COMMAND} -E echo "Copying pre-installed CMakeLists.txt"
|
|
&& ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.bwa_wasm.txt CMakeLists.txt
|
|
&& git apply ../bwa.patch
|
|
CONFIGURE_COMMAND ${CMAKE_COMMAND}
|
|
-DWASI_SDK_PREFIX=${WASISDK_HOME}
|
|
-DCMAKE_TOOLCHAIN_FILE=${WASISDK_TOOLCHAIN}
|
|
-DCMAKE_SYSROOT=${WASISDK_SYSROOT}
|
|
-DCMAKE_C_FLAGS=-isystem\ ${CMAKE_CURRENT_SOURCE_DIR}/../include/sse\ -isystem\ ${CMAKE_CURRENT_SOURCE_DIR}/../include/libc/musl
|
|
${CMAKE_CURRENT_SOURCE_DIR}/bwa
|
|
BUILD_COMMAND make bwa_wasm_opt -j 4
|
|
INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_if_different ./bwa.opt.wasm ${CMAKE_CURRENT_BINARY_DIR}/bwa.wasm
|
|
)
|
|
|
|
################ bwa data ################
|
|
ExternalProject_Add(bwa-kit
|
|
PREFIX bwa-kit
|
|
URL https://sourceforge.net/projects/bio-bwa/files/bwakit/bwakit-0.7.15_x64-linux.tar.bz2/download
|
|
URL_HASH SHA256=0a7b11971bc7916b68e9df35a364afe77cb3000df02ffb3a6fbd1aff9be5878c
|
|
DOWNLOAD_NAME bwakit-0.7.15_x64-linux.tar.bz2
|
|
DOWNLOAD_EXTRACT_TIMESTAMP ON
|
|
DOWNLOAD_NO_EXTRACT OFF
|
|
DOWNLOAD_NO_PROGRESS ON
|
|
UPDATE_COMMAND ""
|
|
PATCH_COMMAND ""
|
|
CONFIGURE_COMMAND ""
|
|
BUILD_COMMAND ""
|
|
INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_if_different
|
|
${CMAKE_CURRENT_BINARY_DIR}/bwa-kit/src/bwa-kit/resource-GRCh38/hs38DH-extra.fa
|
|
${CMAKE_CURRENT_BINARY_DIR}/hs38DH-extra.fa
|
|
)
|