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27e7e160af
Upgrade the version of related toolkits: - upgrade llvm to 15.0 - upgrade wasi-sdk to 19.0 - upgrade emsdk to 3.1.28 - upgrade wabt to 1.0.31 - upgrade binaryen to 111 And upgrade the CI scripts, sample workload build scripts, Dockerfiles, and documents.
47 lines
1.1 KiB
Markdown
47 lines
1.1 KiB
Markdown
"bwa" sample introduction
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==============
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This sample demonstrates how to build [bwa](https://github.com/lh3/bwa) into
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WebAssembly with simd support and run it with iwasm.
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## Preparation
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please refer to [installation instructions](../README.md).
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## Build
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``` shell
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$ mkdir build && cd build
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$ cmake ..
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$ make
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# to verify
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$ ls bwa.wasm
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```
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## Download sample data
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Download the bwa-0.7.15 binary package from
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[such an address](https://sourceforge.net/projects/bio-bwa/files/bwakit/bwakit-0.7.15_x64-linux.tar.bz2/download),
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a sample data file named **hs38DH.fa** will be used later.
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If want more data, please refer to http://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/
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## Run workload
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Firstly please build iwasm with simd support:
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``` shell
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$ cd <wamr dir>/product-mini/platforms/linux/
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$ mkdir build && cd build
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$ cmake ..
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$ make
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```
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Then compile wasm file to aot file and run:
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``` shell
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$ cd <wamr dir>/samples/workload/bwa/build
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$ <wamr dir>/wamr-compiler/build/wamrc -o bwa.aot bwa.wasm
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$ <wamr dir>/product-mini/platforms/linux/iwasm --dir=. bwa.aot index hs38DH.fa
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```
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